napari-vemseg
A simple plugin for semi-automated segmentation of volume electron microscopy images.
A simple plugin to do semi-automated segmentation within napari using vemseg built on XGBoost.
Installation¶
conda
Installation and Environment Creation¶
To start with a conda environment must be created.
conda create -n vemseg-env python=3.8
conda activate vemseg-env
napari
Instillation¶
We must then install napari:
pip install "napari[all]"
napari-vemseg
Instillation¶
You can finally install napari-vemseg
via pip:
conda install pyopencl
pip install napari-vemseg
Usage¶
Train VEMClassifier¶
Predict Using Pretrained VEMClassifier¶
Contributing¶
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License¶
Distributed under the terms of the BSD-3 license, "napari-vemseg" is free and open source software
Issues¶
If you encounter any problems, please [file an issue] along with a detailed description.
Version:
- 0.0.9
Last updated:
- 15 March 2023
First released:
- 14 March 2023
License:
- BSD-3-Clause
Supported data:
- Information not submitted
Plugin type:
GitHub activity:
- Stars: 0
- Forks: 0
- Issues + PRs: 0