A napari plugin for interacting with electron cryotomograms
A napari plugin for visualising and interacting with electron cryotomograms.
You can install
napari-tomoslice via pip:
pip install napari-tomoslice
This plugin provides a user interface for opening electron cryotomograms in napari as both volumes and slices through volumes.
The plugin can be opened from the
plugins menu in napari, or with
napari-tomoslice at the command line.
Usage: napari-tomoslice [TOMOGRAM_FILE] An interactive tomogram slice viewer in napari. Controls: x/y/z - align normal vector along x/y/z axis click and drag - shift plane along its normal vector alt-click - add point on plane (if points layer is active) o - align plane normal to view direction  - decrease/increase plane thickness Arguments: [TOMOGRAM_FILE] Options: --help Show this message and exit.
Contributions are very welcome.
Distributed under the terms of the BSD-3 license, "napari-tomoslice" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.
- 01 February 2022
- 24 October 2021
- Information not submitted
- Stars: 3
- Forks: 2
- Issues + PRs: 0