Discover, install, and share napari plugins

  • Discover plugins that solve your image analysis challenges
  • Learn how to install into napari
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Browse plugins: 293

WSI Reader

napari-wsi

A plugin to read whole slide images within napari.

  • Philipp Plewa
  • Version

    0.1.2
  • Last updated

    27 March 2023
  • Plugin type

    Reader, Widget

vollseg-napari-trackmate

vollseg-napari-trackmate

Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library

  • Varun kapoor
  • Version

    2.0.5
  • Last updated

    26 March 2023
  • Plugin type

    information not submitted

napari generic SIMulator

napari-generic-SIMulator

A napari plugin to simulate raw-image stacks of Structured illumination microscopy (SIM).

  • Meizhu Liang
  • Version

    0.0.29
  • Last updated

    24 March 2023
  • Plugin type

    Widget

napari-bbox

napari-bbox

A new layer for bounding boxes in 2+ dimensions

  • David Bauer
  • Version

    0.0.2
  • Last updated

    24 March 2023
  • Plugin type

    information not submitted

TomoTwin

napari-tomotwin

Several tools for the work with TomoTwin

  • Thorsten Wagner
  • Version

    0.1.1
  • Last updated

    24 March 2023
  • Plugin type

    Widget

napari-process-points-and-surfaces

napari-process-points-and-surfaces

Process and analyze surfaces using open3d and vedo in napari

  • Robert Haase
  • Johannes Soltwedel
  • Version

    0.4.2
  • Last updated

    23 March 2023
  • Plugin type

    information not submitted
Workflow step:
Clustering
Visualization
Image annotation
Image Segmentation

3D cell centroid annotator

napari-cell-centroid-annotator

A simple plugin to annotate cell centroids in 3D images

  • Tim Van De Looverbosch
  • Version

    0.0.1
  • Last updated

    23 March 2023
  • Plugin type

    Reader, Widget

BacSeg

napari-bacseg

Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.

  • Piers Turner
  • Version

    1.0.4
  • Last updated

    22 March 2023
  • Plugin type

    Widget

anchor-droplet-chip

anchor-droplet-chip

Segment organoids and measure intensities

  • Andrey Aristov
  • Version

    0.2.4
  • Last updated

    22 March 2023
  • Plugin type

    Reader, Widget, Sample data

Napari Listener

napari-listener

Control napari via local socket.

  • Ashley Anderson
  • Version

    0.1.0b1.post1
  • Last updated

    21 March 2023
  • Plugin type

    Widget

ToMoDL Reconstruction

napari-tomodl

A plugin for optical projection tomography reconstruction with model-based neural networks.

  • Marcos Antonio Obando
  • Version

    0.0.9
  • Last updated

    20 March 2023
  • Plugin type

    Widget

napari-clusters-plotter

napari-clusters-plotter

A plugin to use with napari for clustering objects according to their properties

  • Laura Zigutyte
  • Ryan Savill
  • Johannes Müller
  • Marcelo Zoccoler
  • Robert Haase
  • Version

    0.6.2
  • Last updated

    17 March 2023
  • Plugin type

    Widget
Workflow step:
Clustering
Visualization
Object feature extraction

napari BudAnnotation

napari-buds

Random-forest automated bud annotation

  • Sander van Otterdijk
  • Version

    0.1.6
  • Last updated

    17 March 2023
  • Plugin type

    Reader, Writer, Widget, Sample data

napari-stress

napari-stress

Interactive surface analysis in napari for measuring mechanical stresses in biological tissues

  • Johannes Soltwedel
  • Ben J. Gross
  • Elijah Shelton
  • Carlos Gomez
  • Otger Campas
  • Version

    0.2.3
  • Last updated

    15 March 2023
  • Plugin type

    Sample data

napari-vemseg

napari-vemseg

A simple plugin for semi-automated segmentation of volume electron microscopy images.

  • Matous Elphick
  • Version

    0.0.9
  • Last updated

    15 March 2023
  • Plugin type

    Widget

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