Discover, install, and share napari plugins

  • Discover plugins that solve your image analysis challenges
  • Learn how to install into napari
  • Share your image analysis tools with napari’s growing community

Browse plugins: 212

napari-tissuumaps

A plugin to export Napari projects to TissUUmaps.

  • Nicolas Pielawski
  • version
    1.1.2
  • release date
    05 August 2022
  • license
    MIT
  • Python version
    >=3.8
  • operating system
    All

    napari-timeseries-opener-plugin

    Simple plugin that opens separate .tif files as a 3-dimensional layer.

    • Niklas Netter
    • version
      0.1.7
    • release date
      05 August 2022
    • license
      BSD-3-Clause
    • Python version
      >=3.7
    • operating system
      All

      napari-serialcellpose

      A simple plugin to batch segment cells with cellpose

      • Guillaume Witz
      • version
        0.2.1
      • release date
        02 August 2022
      • license
        BSD-3-Clause
      • Python version
        >=3.8
      • operating system
        All

        napari-allencell-annotator

        A plugin that enables annotations provided by Allen Institute for Cell Science

        • Allen Institute for Cell Science
        • version
          0.0.7
        • release date
          02 August 2022
        • license
          information not submitted
        • Python version
          >=3.7
        • operating system
          All

          napari-segment-blobs-and-things-with-membranes

          A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes

          • Robert Haase
          • version
            0.3.1
          • release date
            02 August 2022
          • license
            BSD-3-Clause
          • Python version
            >=3.8
          • operating system
            All
            Image modality:
            Fluorescence microscopy
            Workflow step:
            Image Segmentation
            Image enhancement
            Image reconstruction

          napari-nd2-folder-viewer

          Look through separate nd2 files in one viewer.

          • Niklas Netter
          • version
            0.0.2
          • release date
            02 August 2022
          • license
            BSD-3-Clause
          • Python version
            >=3.8
          • operating system
            All

            napari-stl-exporter

            Exports label images to 3D-printable stl files.

            • Johannes Müller
            • version
              0.0.11
            • release date
              02 August 2022
            • license
              BSD-3-Clause
            • Python version
              >=3.7
            • operating system
              All

              imaxt-multiscale-plugin

              A simple plugin to use with napari

              • Eduardo Gonzalez Solares
              • version
                0.1.4
              • release date
                01 August 2022
              • license
                LGPL-3.0-only
              • Python version
                >=3.8
              • operating system
                All

                napari-LF

                Light field imaging plugin for napari

                • Geneva Schlafly
                • Amitabh Verma
                • Rudolf Oldenbourg
                • version
                  0.0.4
                • release date
                  28 July 2022
                • license
                  BSD-3-Clause
                • Python version
                  >=3.7
                • operating system
                  All

                  napari-help

                  Helpful tooltips for napari.

                  • Lorenzo Gaifas
                  • version
                    0.1.0
                  • release date
                    28 July 2022
                  • license
                    GPL-3.0
                  • Python version
                    >=3.8
                  • operating system
                    All

                    napari-sift-registration

                    Simple plugin for SIFT keypoint detection, and affine registration with RANSAC, based on scikit-image

                    • John Fozard
                    • version
                      0.1.2
                    • release date
                      27 July 2022
                    • license
                      BSD-3-Clause
                    • Python version
                      >=3.8
                    • operating system
                      All

                      napari-nlm

                      NLM (non local means) denoising

                      • Martin Weigert
                      • version
                        0.0.4
                      • release date
                        26 July 2022
                      • license
                        BSD-3-Clause
                      • Python version
                        >=3.8
                      • operating system
                        All

                        avidaq

                        controls for napari and micromanger

                        • Riley M Shea
                        • version
                          0.0.4
                        • release date
                          26 July 2022
                        • license
                          BSD-3-Clause
                        • Python version
                          >=3.8
                        • operating system
                          All

                          empanada-napari

                          Napari plugin of algorithms for Panoptic Segmentation of organelles in EM

                          • Ryan Conrad
                          • version
                            0.2.1
                          • release date
                            26 July 2022
                          • license
                            BSD-3-Clause
                          • Python version
                            >=3.7
                          • operating system
                            All
                            Workflow step:
                            Image Segmentation

                          guanine-crystal-analysis

                          A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye

                          • Mara Lampert
                          • version
                            0.0.1
                          • release date
                            26 July 2022
                          • license
                            BSD-3-Clause
                          • Python version
                            >=3.8
                          • operating system
                            All

                            Sign up to receive updates