Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
Spectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures
BaSiCPy illumination correction for napari
napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis
a plugin for mother machine image analysis
Registration of 3D movies applied to all channels
Automated multi-atlas whole-brain microscopy registration
Import Trackmate XML files for Track Visualization and analysis in Napari.
Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
A napari plugin for calculating features from intensity-label image data
A segmentation tool to get conidie and hyphe
A NAPari PLOTter TOOLbar and tools for additional functionalities.
A plugin to analyse point spread functions (PSFs).
A simple plugin for counting objects in 3D images
Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy