The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

VollSeg Napari MTrack Plugin

vollseg-napari-mtrack

Segment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch

License BSD-3 PyPI Python Version tests codecov napari hub

Segment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch


Elaborate documentation for users of this repository at this documentation

This napari plugin was generated with Cookiecutter using @caped's cookiecutter-napari-plugin template.

Installation

You can install vollseg-napari-mtrack via pip:

pip install vollseg-napari-mtrack

To install latest development version :

pip install git+https://github.com/Kapoorlabs-CAPED/vollseg-napari-mtrack.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "vollseg-napari-mtrack" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 1.4.7

Last updated:

  • 28 October 2023

First released:

  • 20 December 2022

License:

Supported data:

  • Information not submitted

Open extension:

  • Information not submitted

GitHub activity:

  • Stars: 3
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • caped-ai