A simple plugin for 3D vessel segmentation

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    A simple plugin for 3D vessel segmentation of LSFM images

    This napari plugin can be used to optimize the segmentation parameters for the main VesselExpress software platform.


    The easiest way to install the plugin is to open napari, go to Plugins, then Install/Uninstall plugins. You will be able to find the plugin by name "vessel-express-napari".

    Or, you can install vessel-express-napari via pip:

    pip install vessel-express-napari

    To install latest development version :

    pip install git+


    We provide a quick start guide to explain the important pieces of this plugin. Suggestions and feature quests are very welcomed.


    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


    Distributed under the terms of the BSD-3 license, "vessel-express-napari" is free and open source software


    If you encounter any problems, please file an issue along with a detailed description.


    • 0.0.8

    Release date:

    • 17 May 2022

    First released:

    • 17 May 2022


    • BSD-3-Clause

    Supported data:

    • Information not submitted

    Plugin type:

    • Information not submitted

    GitHub activity:

    • Stars: 0
    • Forks: 1
    • Issues + PRs: 13

    Python versions supported:

    Operating system:


    • napari-plugin-engine (>=0.1.4)
    • numpy
    • itk
    • scikit-image
    • aicssegmentation

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