skeleton-finder

skeleton-finder

Description

A Napari plugin for skeleton computation on 2D gray-scale images. Currently support:

  1. Skeleton finding and drawing
  2. A customizable segmentation parameter for thresholding the area of interest
  3. A customizable pruning parameter to keep a part of the skeleton
  4. Skeleton colored by distance to the boundary
  5. Only support single png or jpg images

example

Usage

Install with

pip install skeleton-finder

Open the plugin widget and select an image layer.

Adjust parameters and find skeleton.

Re-adjusting parameters after computing a skeleton is also supported.

Be sure to use the Reset button after finishing the computation for an image

License

The plugin is distributed under the terms of BSD-3 license.

Issues

If you encounter any issues, please file an issue along with a detailed description

Version:

  • 0.0.2

Last updated:

  • 25 May 2022

First released:

  • 25 May 2022

License:

Supported data:

  • Information not submitted

Plugin type:

  • Information not submitted

GitHub activity:

  • Stars: 0
  • Forks: 1
  • Issues + PRs: 2

Python versions supported:

Operating system:

Requirements:

  • napari
  • plyfile

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