skeleton-finder

skeleton-finder

Summary


    Authors:

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    Description

    A Napari plugin for skeleton computation on 2D gray-scale images. Currently support:

    1. Skeleton finding and drawing
    2. A customizable segmentation parameter for thresholding the area of interest
    3. A customizable pruning parameter to keep a part of the skeleton
    4. Skeleton colored by distance to the boundary
    5. Only support single png or jpg images

    example

    Usage

    Install with

    pip install skeleton-finder

    Open the plugin widget and select an image layer.

    Adjust parameters and find skeleton.

    Re-adjusting parameters after computing a skeleton is also supported.

    Be sure to use the Reset button after finishing the computation for an image

    License

    The plugin is distributed under the terms of BSD-3 license.

    Issues

    If you encounter any issues, please file an issue along with a detailed description

    Version:

    • 0.0.2

    Release date:

    • 25 May 2022

    First released:

    • 25 May 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    Plugin type:

    • Information not submitted

    GitHub activity:

    • Stars: 0
    • Forks: 0
    • Issues + PRs: 1

    Python versions supported:

    Operating system:

    Requirements:

    • napari
    • plyfile

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