PALMari
A pipeline for PALM movies analysis (pre-processing, localization, drifft correction, tracking)
Process your SPT-PALM recordings with PALMari's all-inclusive pipeline: spot detection, sub-pixel localization, tracking & more. Start quickly with default parameters or customize your pipeline, and run it on entire folder of microscope recordings.
Getting Help¶
Email Hippolyte Verdier : hverdier@pasteur.fr
Version:
- 0.2.18
Last updated:
- 13 January 2023
First released:
- 06 May 2022
License:
- "CeCILL"
Supported data:
- Information not submitted
Plugin type:
GitHub activity:
- Stars: 4
- Forks: 0
- Issues + PRs: 2
GitHub activity:
- Stars: 4
- Forks: 0
- Issues + PRs: 2
Requirements:
- click
- dask (>=2022.1.0)
- dask-image (>=2021.12.0)
- imageio-ffmpeg
- magicgui (>=0.5.0)
- matplotlib (>=3.5)
- munkres
- napari
- nd2reader
- numpy
- pandas
- pyyaml
- qtpy
- scikit-image (>=0.18.3)
- scikit-learn
- tiffile
- toml
- tqdm
- trackpy (>=0.5.0)