napari-wsireg

plugin to perform whole slide image registration with wsireg


Plugin to perform whole slide image registration based on wsireg.

Please see wsireg for more info image formats, features and how registration works.

Usage

Add images from napari layers or from file and set up "registration paths" between them. OME-TIFF is best supported format.

Installation

You can install napari-wsireg via pip:

pip install napari-wsireg

To install latest development version :

pip install git+https://github.com/nhpatterson/napari-wsireg.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-wsireg" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.0

Release date:

  • 27 April 2022

First released:

  • 27 April 2022

License:

  • BSD-3-Clause

Supported data:

GitHub activity:

  • Stars: 4
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • wsireg (>=0.3.4)
  • SimpleITK
  • czifile
  • dask
  • imagecodecs
  • napari
  • numpy
  • ome-types
  • pint
  • qtpy
  • tifffile
  • zarr (>=2.10.3)
  • napari-geojson
  • networkx
  • matplotlib

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