plugin to perform whole slide image registration with wsireg

Workflow step:
Image registration
Image registrationAffine registration
Image registrationAffine registrationRigid registration
Image registrationDeformable registration
Image registrationIntensity-based registration
Image modality:
Fluorescence microscopy

Plugin to perform whole slide image registration based on wsireg.

Please see wsireg for more info image formats, features and how registration works.


Add images from napari layers or from file and set up "registration paths" between them. OME-TIFF is best supported format.


You can install napari-wsireg via pip:

pip install napari-wsireg

To install latest development version :

pip install git+


Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


Distributed under the terms of the BSD-3 license, "napari-wsireg" is free and open source software


If you encounter any problems, please file an issue along with a detailed description.


  • 0.1.2

Last updated:

  • 16 August 2022

First released:

  • 27 April 2022


  • BSD-3-Clause

Supported data:

Plugin type:

GitHub activity:

  • Stars: 10
  • Forks: 2
  • Issues + PRs: 2

Python versions supported:

Operating system:


  • wsireg (>=0.3.6)
  • SimpleITK
  • czifile
  • dask
  • imagecodecs
  • napari
  • numpy
  • ome-types
  • pint
  • qtpy
  • tifffile
  • zarr (>=2.10.3)
  • napari-geojson
  • networkx
  • matplotlib

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