A simple plugin for semi-automated segmentation of volume electron microscopy images.
A simple plugin to do semi-automated segmentation within napari using vemseg built on XGBoost.
conda Installation and Environment Creation¶
To start with a conda environment must be created.
conda create -n vemseg-env python=3.8 conda activate vemseg-env
We must then install napari:
pip install "napari[all]"
You can finally install
napari-vemseg via pip:
conda install pyopencl pip install napari-vemseg
Predict Using Pretrained VEMClassifier¶
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-vemseg" is free and open source software
If you encounter any problems, please [file an issue] along with a detailed description.
- 15 March 2023
- 14 March 2023
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