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U-FISH

napari-ufish

Deep learning-based FISH spot calling method.

License MIT PyPI Python Version tests napari hub

Deep learning-based FISH spot calling method. The napari plugin for U-FISH.

TODO List

  • Sample image
  • Inference interface
    • Inference parameters
    • Load model from path
    • Help information dialog
  • Training interface

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-ufish via pip:

pip install napari-ufish

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-ufish" is free and open source software

Issues

If you encounter any problems, please [file an issue] along with a detailed description.

Version:

  • 0.0.1

Last updated:

  • 30 September 2023

First released:

  • 30 September 2023

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image
  • ufish
  • napari

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