napari-tomoslice

A napari plugin for visualising and interacting with electron cryotomograms.

Installation¶

You can install napari-tomoslice via pip:

pip install napari-tomoslice

Usage¶

This plugin provides a user interface for opening electron cryotomograms in napari as both volumes and slices through volumes.

The plugin can be opened from the plugins menu in napari, or with napari-tomoslice at the command line.

Usage: napari-tomoslice [TOMOGRAM_FILE]

  An interactive tomogram slice viewer in napari.

  Controls: 
  x/y/z - align normal vector along x/y/z axis 
  click and drag - shift plane along its normal vector
  alt-click - add point on plane (if points layer is active)
  o - align plane normal to view direction
  [] - decrease/increase plane thickness

Arguments:
  [TOMOGRAM_FILE]

Options:
  --help                          Show this message and exit.

Contributing¶

Contributions are very welcome.

License¶

Distributed under the terms of the BSD-3 license, "napari-tomoslice" is free and open source software

Issues¶

If you encounter any problems, please file an issue along with a detailed description.