Version:

  • 0.0.5

Release date:

  • 31 October 2021

First released:

  • 24 October 2021

License:

  • BSD-3-Clause

GitHub activity:

  • Stars: 3
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • napari[pyqt5] (==0.4.12)
  • mrcfile
  • typer

napari-tomoslice

A napari plugin for interacting with electron cryotomograms

License PyPI Python Version tests codecov

A napari plugin for visualising and interacting with electron cryotomograms.

Installation

You can install napari-tomoslice via pip:

pip install napari-tomoslice

Usage

This plugin provides a user interface for opening electron cryotomograms in napari as both volumes and slices through volumes.

demo

The plugin can be opened from the plugins menu in napari, or with napari-tomoslice at the command line.

plugins-menu

Usage: napari-tomoslice [TOMOGRAM_FILE]

  An interactive tomogram slice viewer in napari.

  Controls: 
  x/y/z - align normal vector along x/y/z axis 
  click and drag - shift plane along its normal vector
  alt-click - add point on plane (if points layer is active)
  o - align plane normal to view direction
  [] - decrease/increase plane thickness

Arguments:
  [TOMOGRAM_FILE]

Options:
  --help                          Show this message and exit.

Contributing

Contributions are very welcome.

License

Distributed under the terms of the BSD-3 license, "napari-tomoslice" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.5

Release date:

  • 31 October 2021

First released:

  • 24 October 2021

License:

  • BSD-3-Clause

GitHub activity:

  • Stars: 3
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • napari[pyqt5] (==0.4.12)
  • mrcfile
  • typer

Version:

  • 0.0.5

Release date:

  • 31 October 2021

First released:

  • 24 October 2021

License:

  • BSD-3-Clause

GitHub activity:

  • Stars: 3
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • napari[pyqt5] (==0.4.12)
  • mrcfile
  • typer

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