Version:

  • 0.0.2

Release date:

  • 03 January 2022

First released:

  • 01 December 2021

License:

  • BSD-3-Clause

Supported data:

  • Information not submitted

GitHub activity:

  • Stars: 5
  • Forks: 2
  • Issues + PRs: 0

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • Information not submitted

napari-time-series-plotter

A Plugin for napari to visualize pixel values over the first dimension (time -> t+3D, t+2D) as graphs.


    Authors:

    • Christopher Nauroth-Kress

    Authors:

    • Christopher Nauroth-Kress

    License PyPI Python Version tests codecov napari hub

    A Plugin for napari to visualize pixel / voxel values over the first dimension (time -> t+3D, t+2D) as graphs.


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Installation

    You can install napari-time_series_plotter via pip:

    pip install napari-time_series_plotter

    To install latest development version :

    pip install git+https://github.com/ch-n/napari-time_series_plotter.git

    Usage

    After installation the plugin adds two widgets to the viewer, one is for selecting the layers you want to examine and the other contains the plot.

    If you selected at least one layer, moving your mouse over the image while holing shift will display the time series data of the hovered voxel as a graph in the plot widget. In the upper right corner a legend with the layer names will be displayed.

    Usage Gif

    Only 3D and 4D images are supported. Selecting a layer of different dimensionality will result in a waring without plotting anything.

    ToDo

    • Add simple usage instructions to README
    • Add gif highlighting usage to README
    • Complete unit tests
    • Complete in code documentation
    • Add Sphinx documentation
    • Upload to PyPi

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-time_series_plotter" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.0.2

    Release date:

    • 03 January 2022

    First released:

    • 01 December 2021

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 5
    • Forks: 2
    • Issues + PRs: 0

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • Information not submitted

    Version:

    • 0.0.2

    Release date:

    • 03 January 2022

    First released:

    • 01 December 2021

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 5
    • Forks: 2
    • Issues + PRs: 0

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • Information not submitted

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