napari-spatialdata

Interactive visualization of spatial omics data with napari


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    Interactive visualization of spatial omics data with napari


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Clone repo and pip install -e .. Run examples e.g. python shape_regions.py or via notebook for the shape export function.

    More documentation on usage will be added later on.

    Expect breaking changes.

    Installation

    You can install napari-spatialdata via pip:

    pip install napari-spatialdata

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-spatialdata" is free and open source software

    Issues

    If you encounter any problems, please [file an issue] along with a detailed description.

    Version:

    • 0.0.0

    Release date:

    • 06 July 2022

    First released:

    • 06 July 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 3
    • Forks: 3
    • Issues + PRs: 11

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • magicgui
    • qtpy
    • numba
    • anndata
    • scikit-image
    • squidpy
    • napari[all]

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