• Version:

    • 0.1.0
  • Release date:

    • 02 September 2021
  • First released:

    • 02 September 2021
  • Development status:

    • 2 - Pre-Alpha
  • License:

    • GPL-3.0

Github Activity

  • Stars: 1
  • Forks: 1
  • Issues + PRs: 1
  • Python versions supported:

    • >=3.9
  • Operating system:

    • OS Independent
  • Requirements:

    • napari-plugin-engine (>=0.1.4)
    • numpy
    • sdeconv (>=0.1.0)

napari-sdeconv

2D and 3D image deconvolution

napari-sdeconv is a suite of Napari plugins for the sdeconv library <https://sylvainprigent.github.io/sdeconv/>_ dedicated to 2D and 3D images deconvolution. It contains multiple deconvolution algorithms and PSF Generators.

  • Example of deconvolution with Spitfire

img

  • Example of how to generate a 3D PSF

img

Installation

You can install napari-sdeconv via pip:

pip install napari-sdeconv

Note that the current version of the package on support python 3.9

The deconvolution depends on FFTW c++ library. FFTW must be installed for the deconvolution plugin to work. The easiest method to install FFTW is to use conda:

conda install -c conda-forge fftw

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the GNU GPL v3.0 license, "napari-tracks-reader" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

  • Version:

    • 0.1.0
  • Release date:

    • 02 September 2021
  • First released:

    • 02 September 2021
  • Development status:

    • 2 - Pre-Alpha
  • License:

    • GPL-3.0

Github Activity

  • Stars: 1
  • Forks: 1
  • Issues + PRs: 1
  • Python versions supported:

    • >=3.9
  • Operating system:

    • OS Independent
  • Requirements:

    • napari-plugin-engine (>=0.1.4)
    • numpy
    • sdeconv (>=0.1.0)

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