napari molecule reader

napari-molecule-reader

A napari plugin that read molecular structure files.


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    A napari plugin that read molecular structure files. It reads PDB and MMCIF files using atomium, expanding molecular assemblies to a full visualization. Data is loaded into napari as Points for ball representation and Vectors for stick representation. If multiple models or assemblies are detected, they will be loaded as separate objects.

    TODO list:

    • [] handle alternate locations (i.e: different conformations in the same pdb model)

    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    Installation

    You can install napari-molecule-reader via pip:

    pip install napari-molecule-reader

    To install latest development version :

    pip install git+https://github.com/brisvag/napari-molecule-reader.git

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-molecule-reader" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.1.2

    Release date:

    • 31 January 2022

    First released:

    • 21 December 2021

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    Plugin type:

    Open extension:

    GitHub activity:

    • Stars: 3
    • Forks: 2
    • Issues + PRs: 1

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • pandas
    • scipy
    • atomium

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