napari-matplotlib

A plugin to use Matplotlib with napari


    License PyPI Python Version tests codecov napari hub

    A plugin to create Matplotlib plots from napari layers


    Introduction

    napari-matplotlib is a bridge between napari and matplotlib, making it easy to create publication quality Matplotlib plots based on the data loaded in napari layers.

    Available widgets

    Slice

    Plots 1D slices of data along a specified axis.

    Histogram

    Plots histograms of individual image layers, or RGB histograms of an RGB image

    Scatter

    Scatters the values of two similarly sized images layers against each other.

    Installation

    You can install napari-matplotlib via pip:

    pip install napari-matplotlib

    To install latest development version :

    pip install git+https://github.com/dstansby/napari-matplotlib.git

    Contributing

    Contributions are very welcome! Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, napari-matplotlib is free and open source software.

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.1.0

    Release date:

    • 07 May 2022

    First released:

    • 02 May 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 20
    • Forks: 3
    • Issues + PRs: 20

    Python versions supported:

    Operating system:

    Requirements:

    • matplotlib
    • napari
    • numpy

    Sign up to receive updates