A napari plugin for handling overlapping labeling data


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    This is a napari-plugin based on the labeling project.

    It allows the generation of overlapping labels in one layer, save and load of this layer in a json-based file format and it contains a widget to explore the overlapping labels layer and select specific segments with a mouse click .

    Please note that currently, the widget part only works by adding it through code with:

    from napari_labeling import edit_widget
    viewer = napari.Viewer()

    An example on how to achieve this can be found in the on GitHub.

    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.


    You can install napari-labeling via pip:

    pip install napari-labeling


    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


    Distributed under the terms of the BSD-3 license, "napari-labeling" is free and open source software


    If you encounter any problems, please file an issue along with a detailed description.


    • 0.1.2

    Release date:

    • 10 May 2022

    First released:

    • 09 May 2022


    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 5
    • Forks: 1
    • Issues + PRs: 1

    Python versions supported:

    Operating system:


    • numpy
    • labeling

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