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napari-cryofibsem-monitor

napari-cryofibsem-monitor

A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument

License PyPI Python Version tests codecov napari hub

A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument

Changelog

  • v0.0.3
    • Update data during milling
    • Align images to keep lamella in the center
    • Monitor thickness

This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-cryofibsem-monitor via pip:

pip install napari-cryofibsem-monitor

To install latest development version :

pip install git+https://github.com/jojoelfe/napari-cryofibsem-monitor.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-cryofibsem-monitor" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.3

Last updated:

  • 12 November 2022

First released:

  • 05 November 2021

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • tifffile
  • imreg-dft
  • matplotlib

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