Crop regions in napari manually

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    Crop regions in napari manually

    Crop in any dimension


    Create a new shapes layer to annotate the region you would like to crop:

    Use the rectangle tool to annotate a region. Start the crop tool from the Tools > Utilities > Crop region menu. Click the Run button to crop the region.

    You can also use the Select shapes tool to move the rectangle to a new place and crop another region by clicking on Run.

    Hint: You can also use the napari-tabu plugin to send all your cropped images to a new napari window.

    This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.


    You can install napari-crop via pip:

    pip install napari-crop


    Contributions are very welcome.


    Distributed under the terms of the BSD-3 license, "napari-crop" is free and open source software


    If you encounter any problems, please create a thread on along with a detailed description and tag @haesleinhuepf.


    • 0.1.5

    Release date:

    • 05 January 2022

    First released:

    • 21 October 2021


    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 4
    • Forks: 2
    • Issues + PRs: 12

    Python versions supported:

    Operating system:


    • napari-plugin-engine (>=0.1.4)
    • numpy
    • scikit-image
    • napari-tools-menu

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