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Conidie

napari-conidie

A segmentation tool to get conidie and hyphe

    License BSD-3 PyPI Python Version tests codecov napari hub

    A segmentation tool to get conidie and hyphe


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

    This plugin is a use case for obtaining conidia and hyphae surface from images. This plugin is a private tool dedicated exclusively to the work of the QUASAV team.

    Installation

    This private tool cannot be found in the built-in napari. The installation therefore follows two steps:

    1 - Install latest development version :

    git clone https://github.com/hereariim/napari-conidie.git

    Or:

    Download napari-conidie zip file

    2 - Drag and drop napari-conidie file into the built-in

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the BSD-3 license, "napari-conidie" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.0.1

    Last updated:

    • 15 December 2022

    First released:

    • 15 December 2022

    License:

    • BSD-3-Clause

    Supported data:

    • Information not submitted

    Plugin type:

    GitHub activity:

    • Stars: 0
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • magicgui
    • qtpy
    • pandas
    • h5py
    • scikit-image
    • napari
    • matplotlib

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