napari-clemreg

A plugin for registering multimodal image volumes based on common segmented structures of interest with point-clouds.


An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)

Installation

To install napari-clemreg it is recommended to create a fresh conda enviornment with Python 3.8:

conda create -n clemreg_env python=3.8

Next, install napari with the following command via pip:

pip install "napari[all]"

Finally, napari-clemreg can be installed with:

pip install napari-clemreg

When installing napari-clemreg on a Windows machine, the following error might appear:

error Microsoft Visual C++ 14.0 is required

Ensure that Visual Studios C++ 14.00 is installed

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-clemreg" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Version:

  • 0.0.1a4

Release date:

  • 06 February 2022

First released:

  • 01 June 2021

License:

  • MIT

Supported data:

  • Information not submitted

GitHub activity:

  • Stars: 3
  • Forks: 4
  • Issues + PRs: 2

Python versions supported:

Operating system:

Requirements:

  • Information not submitted

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