3D cell centroid annotator


A simple plugin to annotate cell centroids in 3D images

License MIT PyPI Python Version tests codecov napari hub

A simple plugin to annotate cell centroids in 3D images

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.


You can install napari-cell-centroid-annotator via pip:

pip install napari-cell-centroid-annotator

To install latest development version :

pip install git+https://github.com/tim-vdl/napari-cell-centroid-annotator.git


Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


Distributed under the terms of the MIT license, "napari-cell-centroid-annotator" is free and open source software


If you encounter any problems, please file an issue along with a detailed description.


  • 0.0.1

Last updated:

  • 23 March 2023

First released:

  • 23 March 2023


Supported data:

  • Information not submitted

Plugin type:

Open extension:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 1

Python versions supported:

Operating system:


  • numpy
  • pandas
  • tifffile
  • pathlib
  • napari
  • napari-plugin-engine
  • napari-layer-table
  • magicgui
  • qtpy

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