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Bud Cell Segmenter

napari-bud-cell-segmenter

A plugin to segment embryonic mammary bud cells and detect 2 RNA probes

License BSD-3 PyPI Python Version tests codecov napari hub

A plugin to segment embryonic mammary bud cells and detect 2 RNA probes


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-bud-cell-segmenter via pip:

pip install napari-bud-cell-segmenter

To install latest development version :

pip install git+https://github.com/AurelienMaillot/napari-bud-cell-segmenter.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-bud-cell-segmenter" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.4

Last updated:

  • 16 December 2022

First released:

  • 14 November 2022

License:

Supported data:

  • Information not submitted

Open extension:

Save extension:

Save layers:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • pandas
  • scikit-image
  • napari
  • tifffile
  • matplotlib
  • scipy

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