Version:

  • 0.2.2

Release date:

  • 08 January 2022

First released:

  • 07 January 2022

License:

  • MIT

Supported data:

  • Information not submitted

GitHub activity:

  • Stars: 2
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

  • >=3.7

Operating system:

  • OS Independent

Requirements:

  • JPype1 (>=1.2.1)
  • matplotlib

napari-J

A plugin to exchange data with FIJI and to use FIJI image analysis from napari


    Authors:

    • Volker Baecker

    Source code:

    Authors:

    • Volker Baecker

    Source code:

    License PyPI Python Version tests codecov

    A plugin to exchange data with FIJI and to use FIJI image analysis from napari. Current features are:

    • get the active image from FIJI
    • send a screenshot to FIJI
    • get a set of points from the FIJI results table
    • filter the points in napari
    • send the filtered points back to FIJI

    Known problems:

    • Crashes on linux when the file-dialog is opened. Workaround: Set the option Use JFileChooser to open/save from the Edit>Options>Input/Output menu.

    This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

    Installation

    You can install napari-J via pip:

    pip install napari-J

    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the MIT license, "napari-J" is free and open source software

    Issues

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.2.2

    Release date:

    • 08 January 2022

    First released:

    • 07 January 2022

    License:

    • MIT

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 2
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • JPype1 (>=1.2.1)
    • matplotlib

    Version:

    • 0.2.2

    Release date:

    • 08 January 2022

    First released:

    • 07 January 2022

    License:

    • MIT

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 2
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    • >=3.7

    Operating system:

    • OS Independent

    Requirements:

    • JPype1 (>=1.2.1)
    • matplotlib

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