A plugin for quantifying shape and neighborhoods from images.

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    A plugin for quantifying shape and neighborhoods from images.

    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.


    You can install morphometrics via pip:

    pip install morphometrics

    To install latest development version :

    pip install git+

    Example applications

    measure the distance between surfaces

    napari plugin for measuring properties of segmented objects (regionprops)

    object classification

    mesh binary mask


    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


    Distributed under the terms of the BSD-3 license, "morphometrics" is free and open source software


    If you encounter any problems, please file an issue along with a detailed description.


    • 0.0.4

    Release date:

    • 20 April 2022

    First released:

    • 17 March 2022


    • BSD-3-Clause

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 6
    • Forks: 1
    • Issues + PRs: 4

    Python versions supported:

    Operating system:


    • leidenalg
    • napari-clusters-plotter
    • napari-skimage-regionprops
    • napari[all]
    • numpy (<1.22)
    • pymeshfix
    • scanpy
    • scikit-image (>0.19.0)
    • scikit-learn
    • tqdm
    • trimesh[easy]

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