imaxt-multiscale-plugin

A simple plugin to use with napari


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    Source code:

    • Information not submitted

    License GNU LGPL v3.0 PyPI Python Version napari hub

    A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.


    Installation

    You can install imaxt-multiscale-plugin via pip:

    pip install imaxt-multiscale-plugin

    Usage

    Run napari with the name of the sample to visualize either a local path:

    napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um

    or a sample in S3 storage:

    napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um

    Screenshots

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    Contributing

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    License

    Distributed under the terms of the GNU LGPL v3.0 license, "imaxt-multiscale-plugin" is free and open source software

    Issues

    If you encounter any problems, please [file an issue] along with a detailed description.

    Version:

    • 0.1.4

    Release date:

    • 01 August 2022

    First released:

    • 27 July 2022

    License:

    • LGPL-3.0-only

    Supported data:

    • Information not submitted

    GitHub activity:

    • Stars: 0
    • Forks: 0
    • Issues + PRs: 0

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • magicgui
    • qtpy
    • imaxt-image
    • xarray
    • dask

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