IMAXT Multiscale Image Napari Plugin


A simple plugin to use with napari

License GNU LGPL v3.0 PyPI Python Version napari hub

A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.


You can install imaxt-multiscale-plugin via pip:

pip install imaxt-multiscale-plugin


Run napari with the name of the sample to visualize either a local path:

napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um

or a sample in S3 storage:

napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um


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Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.


Distributed under the terms of the GNU LGPL v3.0 license, "imaxt-multiscale-plugin" is free and open source software


If you encounter any problems, please [file an issue] along with a detailed description.


  • 0.3.1

Last updated:

  • 31 May 2023

First released:

  • 27 July 2022

Supported data:

  • Information not submitted

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GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:


  • numpy
  • magicgui
  • qtpy
  • xarray
  • dask
  • astropy
  • zarr

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