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Disease classifier

disease-classifier

A disease classifier based on iPAC images.

License PyPI Python Version tests codecov napari hub

A napari plugin for disease classification based on iPAC images.

Installation

You can install disease-classifier via pip:

pip install disease-classifier

To install latest development version :

pip install git+https://github.com/zcqwh/disease-classifier.git

Introduction

Load data (.rtdc or .bin)

  • Drag and drop the data in .rtdc or .bin into the files table.
  • Click eye button to preview images.

Choose model and classify

  • Choose the model folder including CNN and RF/PLDA.
  • Check the data.
  • Click classify.

Preview classification results

  • Click the eye button to preview the result.
  • Click the header to show all.

Save results

  • Click “Add classification to .rtdc file” button to save results.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "disease-classifier" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Version:

  • 0.0.1

Last updated:

  • 07 June 2022

First released:

  • 07 June 2022

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 1
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • matplotlib
  • h5py (>=3.6.0)
  • napari (>=0.4.15)
  • numpy (>=1.22.4)
  • opencv-contrib-python-headless (>=4.5.5.64)
  • pytranskit (>=0.2.3)
  • statsmodels (>=0.13.2)

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