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Browse plugins: 230

the-segmentation-game

Gamified image segmentation quality estimation

  • Robert Haase
  • Martin Schätz
  • version
    0.2.0
  • release date
    02 October 2022
  • license
    BSD-3-Clause
  • Python version
    >=3.7
  • operating system
    All

    napari-buds

    Random-forest automated bud annotation

    • Sander van Otterdijk
    • version
      0.0.5
    • release date
      02 October 2022
    • license
      BSD-3-Clause
    • Python version
      >=3.8
    • operating system
      All

      napari-assistant

      A pocket calculator like interface to image processing in napari

      • Robert Haase
      • Ryan Savill
      • version
        0.3.14
      • release date
        02 October 2022
      • license
        BSD-3-Clause
      • Python version
        >=3.8
      • operating system
        All

        RedLionfish

        Fast Richardson-Lucy deconvolution of 3D volume data using GPU or CPU with napari plugin.

        • Luis Perdigao
        • version
          0.8
        • release date
          30 September 2022
        • license
          Apache-2.0
        • Python version
          information not submitted
        • operating system
          MacOS, Windows, Linux

          hesperos

          A plugin to manually or semi-automatically segment medical data and correct previous segmentation data.

          • Charlotte Godard
          • version
            0.1.29
          • release date
            30 September 2022
          • license
            BSD-3-Clause
          • Python version
            >=3.8
          • operating system
            All

            devbio-napari

            A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology.

            • Robert Haase
            • version
              0.7.0
            • release date
              30 September 2022
            • license
              BSD-3-Clause
            • Python version
              >=3.8
            • operating system
              All

              koopa-viz

              Vizualization plugin for koopa image analysis

              • Bastian Eichenberger
              • version
                0.0.1
              • release date
                29 September 2022
              • license
                MIT
              • Python version
                >=3.8
              • operating system
                All

                napari-nD-annotator

                A toolbox for annotating objects one by one in nD

                • David Bauer
                • Jozsef Molnar
                • Dominik Hirling
                • version
                  0.0.8
                • release date
                  29 September 2022
                • license
                  BSD-3-Clause
                • Python version
                  >=3.8
                • operating system
                  All

                  napari-boxmanager

                  Particle selection tool for cryo-em

                  • Markus Stabrin
                  • version
                    0.2.8
                  • release date
                    28 September 2022
                  • license
                    MPL-2.0
                  • Python version
                    >=3.10
                  • operating system
                    All

                    napari-stress

                    Interactive surface analysis in napari for measuring mechanical stresses in biological tissues

                    • Johannes Müller
                    • Ben J. Gross
                    • Robert Haase
                    • Elijah Shelton
                    • Carlos Gomez
                    • Otger Campas
                    • version
                      0.0.21
                    • release date
                      26 September 2022
                    • license
                      BSD-3-Clause
                    • Python version
                      >=3.8
                    • operating system
                      All

                      napari-brightness-contrast

                      Advanced layer visualization options

                      • Robert Haase
                      • version
                        0.1.8
                      • release date
                        25 September 2022
                      • license
                        BSD-3-Clause
                      • Python version
                        >=3.7
                      • operating system
                        All

                        napari-skimage-regionprops

                        A regionprops table widget plugin for napari

                        • Robert Haase
                        • version
                          0.5.4
                        • release date
                          24 September 2022
                        • license
                          BSD-3-Clause
                        • Python version
                          >=3.8
                        • operating system
                          All
                          Workflow step:
                          Object feature extraction

                        napari-simpleitk-image-processing

                        Process and analyze images using SimpleITK in napari

                        • Robert Haase
                        • version
                          0.4.4
                        • release date
                          24 September 2022
                        • license
                          BSD-3-Clause
                        • Python version
                          >=3.8
                        • operating system
                          All
                          Workflow step:
                          Image Segmentation
                          Image correction
                          Image reconstruction
                          Image enhancement
                          Object feature extraction
                          Morphological operations
                          Image feature detection

                        napari-pyclesperanto-assistant

                        GPU-accelerated image processing in napari using OpenCL

                        • Robert Haase
                        • Talley Lambert
                        • version
                          0.20.0
                        • release date
                          24 September 2022
                        • license
                          BSD-3-Clause
                        • Python version
                          >=3.6
                        • operating system
                          All
                          Workflow step:
                          Image Segmentation
                          Image correction
                          Image reconstruction
                          Image enhancement
                          Object feature extraction
                          Morphological operations
                          Image feature detection
                          Visualization

                        napari-lattice

                        Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

                        • Pradeep Rajasekhar
                        • Lachlan Whitehead
                        • Robert Haase
                        • version
                          0.2.1
                        • release date
                          23 September 2022
                        • license
                          GPL-3.0
                        • Python version
                          >=3.8
                        • operating system
                          All

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