This is a collection of plugins developed at KapoorLabs, Paris. We develop several workflows for single cell biologists based on VollSeg Napari plugin and other python libraries created by us.
Varun KapoorData Scientist,KapoorLabs, Paris
Collection last updated: 01 May 2023
Irregular cell shape segmentation using VollSeg
Cell, Nuclei, Cytoplasm and filament kymograph segmentation and denoising.
VollSeg Napari MTrack Pluginvollseg-napari-mtrack
Segment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch
Dynamic instability quantification of microtubule and actin filaments using VollSeg and Ransac.
Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
Track and track statistics analysis using Fiji plugin TrackMate outputs and tracks layer in Napari.