KapoorLabs
This is a collection of plugins developed at KapoorLabs, Paris. We develop several workflows for single cell biologists based on VollSeg Napari plugin and other python libraries created by us.
Varun KapoorData Scientist,KapoorLabs, Paris
Collection last updated: 01 May 2023
vollseg-napari
vollseg-napariIrregular cell shape segmentation using VollSeg
Varun Kapoor
Cell, Nuclei, Cytoplasm and filament kymograph segmentation and denoising.
VollSeg Napari MTrack Plugin
vollseg-napari-mtrackSegment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch
Varun Kapoor
Dynamic instability quantification of microtubule and actin filaments using VollSeg and Ransac.
vollseg-napari-trackmate
vollseg-napari-trackmateTrack analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
Varun kapoor
Track and track statistics analysis using Fiji plugin TrackMate outputs and tracks layer in Napari.