BrainGlobe
Plugins for computational neuroanatomy using the BrainGlobe suite of tools. Amongst other applications, this collection provides a pipeline for the analysis of whole-brain fluorescence microscopy data (e.g. from blockface or lightsheet microscopy).
Adam TysonHead Research Engineer,Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
Collection last updated: 30 May 2022
brainreg-napari
brainreg-napariMulti-atlas whole-brain microscopy registration
Multi-atlas whole-brain microscopy registration
cellfinder-napari
cellfinder-napariEfficient cell detection in large images
Adam Tyson
Quickly detect neurons in whole brain fluorescence imaging data
brainreg-segment
brainreg-segmentManual segmentation of 3D brain structures in a common anatomical space
Adam Tyson, Horst Obenhaus
Manual segmentation of 3D brain structures in a common anatomical space
brainglobe-napari-io
brainglobe-napari-ioRead and write files from the BrainGlobe neuroanatomy suite
Adam Tyson
Read and write files from the BrainGlobe neuroanatomy suite