Segmentation Plugins by the Alfa Cohort
Plugins for cell segmentation created by participants in the the napari Alfa Cohort, a collaboration between some of the first napari Plugin Developers and Chan Zuckerberg Initiative. More information on this collaboration can be found here: https://chanzuckerberg.github.io/napari-plugin-alfa-cohort/
Justin KigginsProduct Manager,Chan Zuckerberg Initiative
Collection last updated: 02 February 2023
napari-yapic-prediction
napari-yapic-predictionnapari widget that performs image segmentation with yapic model in the napari window. Install TENSORFLOW to use this plugin.
Pranjal Dhole, Duway Nicolas Lesmes Leon
Classify every pixel from your own pre-trained deep learning models
cellfinder-napari
cellfinder-napariEfficient cell detection in large images
Adam Tyson
Quickly detect neurons in whole brain flourescent imaging data
cellpose-napari
cellpose-naparia generalist algorithm for anatomical segmentation
Carsen Stringer
Segment cells and nuclei leveraging cytoplasm channels
Napari nucleAIzer plugin
napari-nucleaizerA GUI interface for training and prediction using the nucleAIzer nuclei detection method.
Ervin Tasnadi
Segment cellular nuclei across a wide range of imaging modalities
stardist-napari
stardist-napariObject Detection with Star-convex Shapes
Uwe Schmidt, Martin Weigert
Segment nuclei from fluorescent and histopathology images